All authors contributed to the revision of the manuscript, and th

All authors contributed to the revision of the manuscript, and they approved it for publication.”
“Background Compared to inorganic light-emitting diodes (LEDs), which have developed for several decades and are still being researched [1–3], organic light-emitting diodes (OLEDs) now have also attracted intensive attention due to their bright future on practical application [4, 5]. In recent years, white organic light-emitting diodes (WOLEDs) have become a research highlight; because of their potential applications in solid-state lighting, panel display technology

Idasanutlin concentration etc., various WOLEDs constructions have been demonstrated [6–9]. Among the structures, multiple quantum well (MQW) device is one of the significant white emission devices because charge carriers and excitons could be confined in a narrow emissive zone to prevent the emitter

from interacting with the adjacent emitter, which is highly similar to the working mechanism of the inorganic MQW constitution of LED. MQW is BAY 63-2521 purchase generally divided into type-I and type-II configurations in OLEDs. Type-I MQW structure is defined as the narrow bandgap molecule located within the wide bandgap molecule; thus, injected carriers are confined between the lowest unoccupied molecular orbital (LUMO) and the highest occupied molecular orbital (HOMO) energy levels of the narrow bandgap molecule. While the LUMO/HOMO energy levels of both two materials in type-II MQW structure are staggered, carriers are confined in different molecules. WOLEDs with the MQW structure have been reported, thanks to the confinement of carriers and excitons within potential wells, but their emissive Dichloromethane dehalogenase efficiency is generally lower than that of the traditional three-layer structure. For example, Xie et al. and

Yang et al. had respectively fabricated an MQW structure white device, but both efficiencies of the fabricated structures were low [10, 11]. The reason for the low efficiency of those MQW structure WOLEDs are attributed to the use of fluorescent material only and incomplete confinement of charge carriers and excitons within the emitting layer (EML) due to adoption of undeserved potential barrier layer (PBL) materials. In order to improve the emissive efficiency of the MQW structure, triplet phosphor must be used and PBL also needs to be skillfully used. Our group had designed triplet MQW structure WOLEDs in which 1,3,5-tris(N-phenyl-benzimidazol-2-yl)benzene (TPBi) was used as PBL, and blue fluorescent dye and orange phosphor doped EML were used as two potential well layers (PWLs), respectively [12]. As a result of the application of better PBL and triplet emitter component PWLs, a peak luminance of 19,000 cd/m2 and a current efficiency of 14.5 cd/A were achieved.

burgdorferi genome shows 36% identity at the amino acid level (E-

burgdorferi genome shows 36% identity at the amino acid level (E-value is 7.9e-08) to bb0259, which has a GEWL domain. We did not attempt to knockout this gene, but it may be a target to consider in future studies. Since chitobiose transport is important for chitin utilization in other organisms [24, 31], we evaluated the S63845 solubility dmso role of chbC during chitin utilization in B. burgdorferi. As expected from previous studies [14, 17], RR34 (chbC mutant) was unable to grow on chitobiose in the absence of free GlcNAc (Fig. 5A). Similarly, no growth was observed when RR34 cells were

cultured in the absence of GlcNAc and supplemented with chitotriose or chitohexose, demonstrating that chbC is also required for the utilization of GlcNAc oligomers longer than chitobiose. Complementation of the chbC mutant by introduction of the wild-type chbC gene on a shuttle vector (Fig. 5B) restores the wild-type phenotype. Together, these results demonstrate that chitobiose transport is necessary for the utilization of chitobiose and longer GlcNAc oligomers, and suggest that an unidentified enzyme(s) involved in the degradation of chitin is secreted, either extracellularly or into the periplasm. In addition, these results show that chitobiose transport is necessary for utilization of sequestered GlcNAc in the second exponential phase, and support our hypothesis

that GlcNAc oligomers are not the source of sequestered LY2606368 clinical trial GlcNAc in the second exponential phase. Previous work conducted in our laboratory suggested that RpoS, one of two alternative sigma factors present in B. burgdorferi, regulates chitobiose utilization in the B31-A background

by partially regulating expression of chbC during GlcNAc starvation [17]. Here we cultured an rpoS mutant in BSK-II lacking GlcNAc and supplemented with chitobiose or chitohexose and 7% unboiled (Fig. 6A) or boiled (Fig. 6B) rabbit serum. Biphasic growth of the rpoS mutant in the presence of chitobiose was nearly identical in unboiled and boiled rabbit serum. This is important because it further demonstrates that unboiled serum does not possess a β-N-acetylglucosaminidase activity that cleaves chitobiose to monomeric GlcNAc. In contrast, growth of the rpoS mutant supplemented with chitohexose was delayed in boiled serum compared Tacrolimus (FK506) to that in unboiled rabbit serum. This delay supports the data presented in Table 1 showing an inherent chitinase activity in unboiled rabbit serum as rpoS mutant growth on chitohexose in unboiled serum (Fig. 6A) mirrors that on chitobiose, suggesting the chitinase activity in the rabbit serum degraded the chitohexose to chitobiose. In addition, the delay in chitohexose utilization in boiled serum strongly suggests that RpoS regulates chitin utilization not only through the regulation of chbC [17], but also through the regulation of other gene(s) important for degradation of chitin.

The microorganisms more commonly isolated from mixed microbial in

The microorganisms more commonly isolated from mixed microbial infections are pathogenic bacteria and fungi. A recent retrospective study of the respiratory tract microbiology of cystic fibrosis patients revealed that their airways

were colonized by multiple microorganisms, in particular Pseudomonas aeruginosa (62% prevalence) in association with Aspergillus species [24]. The epidemiology and clinical significance of Aspergillus infection in cystic fibrosis patients have been recently reviewed [25–27]. Among the numerous Aspergillus isolates recovered from the respiratory tracts of cystic fibrosis patients, A. fumigatus is the most predominant species with a prevalence ranging from 11% to 14% in the United States [28] Selleck Bafilomycin A1 and as high as 60% to 78% in Europe [29, 30], followed by A. terreus. Although invasive aspergillosis can occur in persons with cystic fibrosis, particularly after lung transplantation, the most common complication of Aspergillus infection is allergic bronchopulmonary aspergillosis [31–34], a condition learn more that causes the deterioration of lung function associated with wheezing, shortness of breath, cough and chest pain. Given the high prevalence of P. aeruginosa and A. fumigatus colonization of the airways of cystic fibrosis

patients, mixed microbial infection involving these microorganisms commonly occurs in the lungs [30, 35, 36] producing monomicrobial and polymicrobial biofilms. The biofilm-embedded cells are highly resistant to antimicrobial drug therapy [37–40], difficult to eradicate and

often develop chronic infection that acts as a reservoir causing serious life-threatening infection in individuals with debilitated immune function. Thymidylate synthase Several investigators have recently studied A. fumigatus monomicrobial biofilm using in vitro [40] and human bronchial epithelial cell culture [38] models. The aerial or surface biofilm is similar to the fungal ball often associated with aspergilloma in patients with lung cavitary lesions. The aerial biofilm made up of fungal mycelia bound together by an extracellular matrix composed of a variety of macromolecules, including galactomannan, α1,3-glucan, monosaccharides and polyols, melanin, proteins including major antigens and hydrophobin molecules [41]. On the other hand, Loussert et al. have recently [42] studied the composition of the mycelial extracellular matrix in vivo and found to have less complex but similar composition. The monomicrobial biofilm of A. fumigatus developed in 96-well cell culture plates and in human bronchial epithelial cell culture were resistant to antimicrobial drugs [38, 40]. Gene expression and proteomic studies by Bruns et al.

380 0 230 1 Syllidae sp 1 48 88 18 57 Isopoda spp 17 25 5 31 Oph

380.0 230.1 Syllidae sp.1 48.88 18.57 Isopoda spp. 17.25 5.31 Ophiopholis aculeata 15.13 3.83 Hiatella arctica 13.25 6.96 Caprellida spp. 11.63 4.13 ATM Kinase Inhibitor research buy Nematoda sp. 11.50 6.07 Musculus spp. (juv.) 7.38 2.76 Thelepus cincinnatus 5.75 1.77 Boltenia echinata 5.13 1.90 Syllidae sp.2 4.25 1.92 Terebellomorpha indet. 4.00 1.13 Polynoidae indet 3.25 1.46 Actinaria spp. 3.13 0.93 Eulalia viridis 3.13 1.23 Polydontidae indet. 3.13 1.76 (b) Biomass (grams wet weight) Species Mean SE Ophiopholis aculeata 7.46 1.67 Myxilla sp.1 1.77 1.69 Thelepus cincinnatus 1.45 0.45 Halichondria

sp. 1.17 0.75 Gammaridea spp. 1.01 0.55 Hyas araneus 0.98 0.62 Lophaster furcifer 0.72 0.48 Hiatella arctica 0.71 0.39 Species regarded as

common are those (of the 61 solitary species) occurring with means > 3 individuals per aggregate and/or those (of the totally 99 sp.) with biomass means > 0.5 g biomass per aggregate The number of individuals (solitary), the biomass, the solitary and total species richness all increased with aggregation volume (Fig. 3). However, the relation of biomass was less linear due to a dominance of the sponge (Myxilla sp. 1) in the second largest aggregation and a comparably low biomass in the largest aggregation where animals were of a small size. Interestingly, both the solitary and total species numbers increased geometrically in relation to aggregation volume. Fig. 3 Relationships between variables of associated faunas and the volume (l) of Filograna implexa Berkeley, 1828, aggregates EPZ-6438 datasheet (n = 8) from the wreck “M/S Flint” in the tidal stream “Rystraumen” in the northern Norway. Regression equations and coefficients of determination (R 2) are given for the linear trend lines of individual numbers of solitary species (a) and biomass of all species (b), and for the geometric Cobimetinib nmr trend lines of solitary species richness (c) and total species richness (d) Discussion This study identifies and characterises a very high local species richness and biodiversity

at high latitude (69°N). More than 100 species comprising only 160 g of biomass were found within only a 4.4 l volume of Serpulid polychate aggregations. In general, average species richness decrease with latitude from the tropics across a range of spatial scales (Stevens 1989; Gaston 1996, 2000). Witman et al. (2004) demonstrated that also local species richness in the marine epibenthos follows this pattern and provided for various latitudes measures of small-scale species richness (0.25 m2). By comparison, the dense and diverse fauna found within Filograna aggregations covering less than 0.05 m2 represents a local high-latitude biodiversity hotspot that provides an exception to the latitudinal diversity gradient.

oklahomensis strains To show that live bacteria are needed for k

oklahomensis strains. To show that live bacteria are needed for killing of G. mellonella, B. thailandensis CDC272 or CDC301 were inactivated by heating to 80°C for 1 hour and then injected into G. mellonella larvae at the same concentration as live bacteria. After 24 hrs, all larvae infected with heat killed bacteria were still alive, whereas those infected with live bacteria had all died (data not shown). Figure 4 Virulence and intracellular survival of Burkholderia strains in Galleria mellonella larvae. Groups of 10 insect larvae were challenged with 100 cfu of different strains of Burkholderia as described in the method section. A) Percentage of surviving selleck kinase inhibitor larvae at 24 hrs post infection.

B) Number of bacteria present inside the haemocoel at 20 hrs post infection (calculated as cfu/ml). In both panels, results are shown as means and standard error of the mean of three independent experiments. B. pseudomallei = black bars; B. thailandensis = white bars and B. oklahomensis strains = grey bars. ND = not detected. At higher challenge doses

of 10,000 cfu bacteria, all of the strains caused 100% mortality of the cohort of larvae at 24 hrs post injection, except B. pseudomallei 708a, B. thailandensis DW503 and B. oklahomensis E0147. At lower inocula of 10 cfu bacteria, Etomoxir order all of the B. pseudomallei strains were able to kill G. mellonella by 72 hrs post challenge, but no dead larvae were recorded up to 5 days after challenge with B. thailandensis or B. oklahomensis. Discussion In this study, we set out to identify inexpensive alternative infection models that would reflect the virulence of B. pseudomallei, B. thailandensis or B. oklahomensis in mice and the association of these isolates with human disease. We have chosen B. pseudomallei isolates with different degree of virulence in mice, with strain 576 representing one of the most virulent isolates Amylase tested to date, and 708a one of the least [7]. B. thailandensis and B. oklahomensis are not normally

considered to be human pathogens. However, occasional cases of disease do occur. We have included clinical isolates of B. thailandensis in our study alongside B. thailandensis isolates that have not been associated with disease (E264 and Phuket), as well as clinical isolates of B. oklahomensis. In general, our results confirm that cell culture or Galleria infection models can be used to discriminate B. pseudomallei, B. thailandensis and B. oklahomensis isolates and these results parallel those found in mice. With the exception of strain 708a and compared with B. thailandensis and B. oklahomensis isolates, the B. pseudomallei isolates we tested grew more rapidly in macrophages, caused a greater degree of cellular damage and caused greater mortality of G. mellonella larvae. The B. oklahomensis isolates we tested were the least virulent in all of these models. Our finding that we are able to distinguish between B. pseudomallei and B. thailandensis isolates on the basis of their virulence in G.

Total DNAs were obtained as described by De Los Reyes-Gavilàn et

Total DNAs were obtained as described by De Los Reyes-Gavilàn et al. [51]. The concentration selleck screening library and purity of DNA was assessed by a NanoDrop® ND-1000 Spectrophotometer

(Thermo Fisher Scientific Inc.). A primer pair (Invitrogen Life Technologies, Milan, Italy), LpigF/LpigR (5′-TACGGGAGGCAGCAGTAG-3′ and 5′-CATGGTGTGACGGGCGGT-3′) [52], corresponding to the position 369-386, and 1424-1441, respectively, of the 16S rRNA gene sequence of L. mucosae, (accession number AF126738) was used to amplify the 16S rRNA gene fragment of presumptive lactic acid bacteria. Fifty microliters of each PCR mixture contained 200 μM of each dNTP, 1 μM of both forward and reverse primer, 2 mM MgCl2, 2 U of Taq DNA polymerase (Invitrogen Life Technologies)

in the supplied buffer, and approximately 50 ng of DNA. PCR amplification Defactinib research buy was carried out using the GeneAmp PCR System 9700 thermal cycler (Applied Biosystems, USA). PCR products were separated by electrophoresis on 1.5% (wt/vol) agarose gel (Gibco BRL, France) stained with ethidium bromide (0.5 mg/ml). The amplicons were eluted from gel and purified by the GFX™ PCR DNA and Gel Band Purification Kit (GE Healthcare Life Sciences, Milan, Italy). DNA sequencing reactions were carried out by MWG Biotech AG (Ebersberg, Germany) using both, forward and reverse, primers. Taxonomic identification of strains was performed by comparing the sequences of each isolate with those reported in the Basic BLAST database http://​www.​ncbi.​nlm.​nih.​gov. Primers casei/para were used to discriminate between the species L. casei, L. paracasei and L. rhamnosus [53]. Primers pheS-21-F/pheS-23-R were used to identify Enterococcus species [54]. Primers designed on recA gene were also used to discriminate between the species L. plantarum, L. pentosus and L. paraplantarum. Part of the recA gene was amplified using the degenerate

primer pair (MWG Biotech AG, Ebersberg, Germany) recALb1F 5′-CRRTBATGCGBATGGGYG-3′/recALb1R Pembrolizumab datasheet 5′-CGRCCYTGWCCAATSCGRTC-3′ derived from the homologous regions of the recA gene sequences of L. plantarum (accession no. AJ621668). PCR reactions and separation, and purification and sequencing of amplicons were carried out as described for 16S rRNA gene. Genotypic characterization by Randomly Amplified Polymorphic DNA-Polymerase Chain Reaction (RAPD-PCR) analysis Genomic DNA from each isolates was extracted as described above. Three oligonucleotides, P4 5′-CCGCAGCGTT-3′, P7 5′-AGCAGCGTGG-3′ and M13 5′-GAGGGTGGCGGTTCT-3′ [55, 56], with arbitrarily chosen sequences, were used for isolates biotyping. Reaction mixture and PCR conditions for primers P4 and P7, and primer M13 were according to De Angelis et al. [55, 56]. PCR products (15 μl) were separated by electrophoresis at 100 V for 200 min on 1.

Match analysis The activity profile (specific measures of this pr

Match analysis The activity profile (specific measures of this profile are described later in this section) of each match was determined by filming the matches with two video cameras (DCR-HC17E, Sony©, Japan) positioned

2 meters away from the side of the court, at the level with the service line and approximately 6 meters above the court. Each player was individually ‘tracked’ to record for the activity profile measures for the entire duration of each match. The video recordings were replayed on a monitor to measure each player’s activity profile in detail. The same researcher performed the video analysis of each player’s activity profile. PI3K Inhibitor Library screening A modified match analysis protocol developed by Smekal et al.[22] was used to extract the following information

as variables of a tennis match to comprise the activity profile: 1. games won; 2. rally duration (seconds); 3. strokes per rally; 4. effective playing time (%); 5. aces; 6. double faults; 7. first service in; 8. second service in; 9. first return in and 10. second return in. The validity and reliability of this protocol has been previously described in the literature [23]. Match analysis included (1) rally duration (s); (2) strokes per rally; (3) effective playing time (%). Rally duration was recorded from the time the service player served the first ball until the moment when one of the players won the point. Strokes per rally were Mocetinostat ic50 quantified as the number of balls hit by the players from the first Adenosine serve in to the end of the point. Therefore, for rally duration and strokes per rally, the time for first serve faults, as well as the stroke for the serve fault, and the time between first and second service were excluded from the analysis. Effective playing time was defined as the real playing time (sum of all the rally durations) divided by the total match duration multiplied by 100, as described by Fernandez-Fernandez et al. [9]. Blood glucose

Glycemia was determined from a blood sample drawn from the ear lobe and analyzed in the Accu-Chek© monitor (Accu-Chek Active, Roche©, Germany). This method of analysis is in accordance with a previous study, which categorized this monitor as “clinically accurate” [24]. Blood samples were drawn while the players were seated prior to and immediately after the matches. The glycemia test-retest had a coefficient of variation (CV) of 3.1%. Statistical analyses All variables were checked for normal distribution and extreme observations using standard procedures. Blood glucose level was analysed using linear mixed models having condition (i.e. CHO and PLA) and time (i.e. Pre and Post) as fixed factors and subjects as a random factor.

Also, this self-powered TNA/water UV detector demonstrates high p

Also, this self-powered TNA/water UV detector demonstrates high photosensitivity and excellent spectral Saracatinib datasheet selectivity. All of these results indicate that this novel UV detector can be a promising candidate as a low-cost UV photodetector for commercially integrated photoelectronic applications. Acknowledgments This work was supported by the National Key Basic Research Program of China (2013CB922303, 2010CB833103), the National Natural Science Foundation of China (60976073, 11274201, 51231007), the 111 Project (B13029), and the Foundation for Outstanding Young Scientist in Shandong Province

(BS2010CL036). References 1. Munoz E, Monroy E, Pau JL, Calle F, Omnes F, Gibart P: III Nitrides and UV detection. J Phys-Condens Mater 2001, 13:7115.CrossRef 2. Razeghi M, Rogalski A: Semiconductor ultraviolet PRN1371 detectors. J Appl Phys 1996, 79:7433.CrossRef 3. Li DB, Sun XJ, Song H, Li ZM, Jiang H, Chen YR, Miao GQ, Shen B: Effect of asymmetric Schottky barrier on GaN-based metal–semiconductor-metal ultraviolet detector. Appl Phys Lett 2011, 99:261102.CrossRef 4. Fu XW, Liao ZM, Zhou YB, Wu HC, Bie YQ, Xu J, Yu DP: Graphene/ZnO nanowire/graphene vertical structure based fast-response

ultraviolet photodetector. Appl Phys Lett 2012, 100:223114.CrossRef 5. Hassan JJ, Mahdi MA, Kasim SJ, Ahmed NM, Hassan HA, Hassan Z: High sensitivity and fast response and recovery times in a ZnO nanorod array/p-Si self-powered ultraviolet detector. Appl Phys Lett 2012, 101:261108.CrossRef 6. Sciuto A, Roccaforte F, Raineri V: Electro-optical response of ion-irradiated 4H-SiC Schottky ultraviolet photodetectors. Appl Phys Lett 2008, 92:093505.CrossRef 7. Zhang F, Yang WF, Huang HL, Chen XP, Wu ZY, Zhu HL, Qi HJ, Yao JK, Fan ZX, Shao JD: High-performance 4H-SiC based metal–semiconductor-metal ultraviolet Etofibrate photodetectors with Al 2 O 3 /SiO 2 films. Appl Phys Lett 2008, 92:251102.CrossRef 8. Kong XZ, Liu CX, Dong W, Zhang XD, Tao C, Shen L, Zhou JR, Fei YF, Ruan SP: Metal–semiconductor-metal TiO 2 ultraviolet detectors with Ni electrodes. Appl Phys Lett 2009, 94:123502.CrossRef

9. Alivov YI, Ozgur U, Dogan S, Johnstone D, Avrutin V, Onojima N, Liu C, Xie J, Fan Q, Morkoc H: Photoresponse of n-ZnO/p-SiC heterojunction diodes grown by plasma-assisted molecular-beam epitaxy. Appl Phys Lett 2005, 86:241108.CrossRef 10. Chang KH, Sheu JK, Lee ML, Tu SJ, Yang CC, Kuo HS, Yang JH, Lai WC: Inverted Al0.25Ga0.75N/GaN ultraviolet p-i-n photodiodes formed on p-GaN template layer grown by metalorganic vapor phase epitaxy. Appl Phys Lett 2010, 97:013502.CrossRef 11. Liang S, Sheng H, Liu Y, Huo Z, Lu Y, Shen H: ZnO Schottky ultraviolet photodetectors. J Cryst Growth 2001, 225:110.CrossRef 12. Cheng G, Wu XH, Liu B, Li B, Zhang XT: ZnO nanowire Schottky barrier ultraviolet photodetector with high sensitivity and fast recovery speed. Appl Phys Lett 2011, 99:203105.CrossRef 13.

The anti-NK1 peptide was against the carboxyterminal tail of the

The anti-NK1 peptide was against the carboxyterminal tail of the NK-1 receptor, which corresponds to amino acids 393-407 of the NK1-FL receptor. Reagent A (Polymer selleck products enhancer), Reagent B (polymerized horseradish peroxidase-anti mouse/rabbit lgG), citrate buffer (pH = 6.0), normal non-immune goat serum (10%), and DAB were purchased from Maixin (Fuzhou, China). SMSP was obtained from Tocris (Avonmouth, UK). SR140333 was kindly provided by Sanofi-Aventis-Chilly-Mazarin. FBS, DMEM (high glucose), trypsin-EDTA (0.05% trypsin 0.53 mM EDTA) were purchased from Gibco (California, USA). MTT, DMSO and Hoechst33258 were purchased from Sigma (Saint Louis, USA). 25 cm2 culture flakes, 96-well

culture plates and 15 mL centrifuge tubes were purchased from Corning (New York, USA). All breast tissues were obtained from Qingdao Municipal Hospital. The patients

providing the tissues did not receive prior treatment with anticancer agents. The study was approved by the institutional review board of Qingdao University. The following tumors were investigated: infiltrating ductal carcinoma (n = 89), infiltrating lobular carcinoma (n = 14). The human breast cancer cell line T47D was purchased from Chinese Type Culture Collection (Shanghai, China). The T47D cells were seeded in 25 cm2 culture flakes and maintained with DMEM supplemented with 10% FBS. The medium was renewed every two days and the cells were passaged by treatment with trypsin-EDTA on the six day after seeding. On the third day T47D MK-4827 molecular weight cells entered exponential phase. Cells were incubated at 37°C in CO2 incubator (SHEL LAB, Oregon, USA) containing 5% CO2. All T47D cells were dissociated by treatment with trypsin-EDTA at 80-90% cell confluence and inoculated at a density of 105cells/mL in ever 6-well plates which contained cover slips. The medium was renewed after two days and the cover slips were extracted on the fourth day, then the specimens were put into acetone (4°C) to

fix for 15 minutes. Immunohistochemistry All tissue specimens were fixed in formalin and embedded in paraffin. Seven-μm paraffin sections were cut and floated onto polylysine adhered slides. The sections were dewaxed in xylene and rinsed in alcohol and graded alcohol/water mixtures. The immunohistochemical staning was performed using Elivision™ plus two-step System. Briefly, all sections were incubated with 3% hydrogen peroxide for 15 minutes to block endogenous peroxidase activity at first. The sections were subsequently treated in a microwave oven twice for 6 minutes in citrate buffer at 600W to undergo antigen repairing. After blocking with goat serum for 30 minutes, rabbit anti-human NK-1 was applied on the sections at the dilution of 1: 700 for 90 minutes at room temperature. After rinsing, staining was performed with Reagent A and Reagent B subsequently. The color was developed by reacting with DAB. Sections were then counterstained with hematoxylin, dehydrated, cleared and coverslipped.

The idea of constructing a database that stores information on en

The idea of constructing a database that stores information on enzybiotics arose from our own research experience. We found that we constantly had to query information on enzybiotics from public databases, such as UniProt, and scientific literature. Thus, we decided to construct a database that simplified our research

efforts, and comprehensively collected this information. EnzyBase, a novel and original database for enzybiotics studies, was developed and currently contains 1144 enzybiotics from 216 natural sources. This database provides a platform for current users to comprehensively and conveniently research enzybiotics and can be MK0683 cost useful for exploring and designing novel enzybiotics for medical use. Construction

and content EnzyBase was built GSI-IX price on an Apache HTTP Server (V2.2.14) with PHP (V5.2.13) and MySQL Server (V5.1.40) as the back-end, and Personal Home Page (PHP), HyperText Markup Language (HTML) and Cascading Style Sheets (CSS) as the front-end. Apache, MySQL, and PHP were preferred as they are open-source software and platform independent, respectively, making them suitable for academic use. The web server and all parts of the database are hosted at Information Office of Fudan University, Shanghai, China. All enzybiotic sequences were collected manually from the annotated UniProt/Swiss-Prot database or scientific literature. Each enzybiotic without the UniProt link had been excluded. The enzybiotics collected in EnzyBase database are primarily from natural sources, with the exception of genetically-modified sequences. Additional physicochemical PAK5 data of each enzybiotic was either calculated via Bioperl programs or identified from scientific literature via a PubMed search. All of the collected information was classified and filled into six relational tables in MySQL. For each enzybiotic, a unique identification number (i.e., enzy id)

was assigned, beginning with the prefix EN. Each entry also contains general data, such as protein name, protein full name, producer organism, simple function annotation and protein sequence, domains, 3D structure, and relevant references. For all proteins that already exist in the UniProt, Interpro [31], and/or PDB [32] databases, hyperlinks to these databases were created in EnzyBase. Additional physicochemical data, including calculated isoelectric point (pI) and charge at pI, are also provided. Moreover, minimal inhibitory concentrations (MICs) are included, if data are available. The BlastP program (BLASTP V2.2.25+) [33, 34] was used for sequence homology searches against EnzyBase. Utility and discussion Database description EnzyBase supplies a user-friendly web interface, so that users can easily query and retrieve information on enzybiotics.