pylori strains has been developed. On the basis of the 12 VNTR loci, the profiles of each isolate were obtained (Figure 1). The clinical

H. pylori strains were divided into 127 selleck screening library MTs, which has not been described previously. According to cluster analysis, most strains from the same focus presented with the same or similar MTs (Figure 1). In addition, strains from the same focus were dispersed in the cluster tree. As shown in Figure 1, the 86.7% (13/15) of the Tokyo isolates had very similar MTs and could be clustered into Group A. One of the remaining Tokyo isolates belonged to the Group C, and the others were scattered distribution. Of the Southern and Eastern Chinese isolates, 74.4% (43/32) were clustered into group B, including B1, B2 and B3 subgroups, and the rest strains were related to Group A, C and D. Of the isolates from Northern China, 60.7% were clustered into two major branches, groups C1 (37.5%, 21/56) and C2 (23.2%, 13/56), and other strains were scattered. Of the Western China isolates, 86.0% (37/43) were clustered into group D. The strains Tibet 1, 14, 23 and 43 were related to Group A, Tibet 37 and Tibet 35 were related to Group B2 and C2.

Figure 1 Dendrogram analysis based on 12 VNTR loci for the 202 H. pylori isolates. Clustering analysis of Neighbor-joining tree (N-J) was using the categorical distance coefficient Aurora Kinase inhibitor and the wards SBE-��-CD molecular weight method. From left to right, the columns designated to the 12 VNTR loci, the strain ID, geographic origin (location) and H. pylori related disease. medroxyprogesterone NC, SC, EC and WC under the column of ‘Region’ stand for the Southern, Northern, Eastern and Western of China respectively. Disease NUD and G represents the non-ulcer dyspepsia (NUD) and gastritis.

And diseases PU (peptic ulcer) comprise duodenal and gastric ulcer as well as disease GC is with the gastric cancer. The branches color code reflects the focus of origin, the same color of the columns stand for origin from the same geographic origin (location). Isolates from different regions showed a certain cluster tendency, as Tokyo isolates were clustered into Group A, Southern and Eastern China isolates were clustered into group B, Northern China were clustered into two major branches, groups C1 and C2. Western China isolates were clustered into group D. While there’s no significant relationship between MTs and H. pylori related diseases. A minimum spanning tree was constructed on the basis of strains from different ethnic groups: 43 Tibetan, 33 Mongolian, 15 Yamato as well as 27 Han (Figure 2). There was a tendency to cluster into four main subgroups. However, there’re still some exceptions, such as the Hangzhou-12 and 21, of Han strains (associated with gastritis and peptic ulcer), were related to the Tibetan strains group. Tibetan strains 1 and 43 (gastritis), were related to the Mongolian group, and Mongolian 16, (gastric cancer), was related to the Japanese group. Figure 2 Minimum spanning tree analysis.